Reyon D, Tsai SQ, Khayter C, Foden JA, Sander JD*, Joung JK*. FLASH Assembly of TALENs     Enables High-Throughput Genome Editing. Nat Biotechnol. 2012; in press. *Co-corresponding     authors

Ramirez CL, Certo MT, Mussolino C, Goodwin MJ, Cradick TJ, McCaffrey AP, Cathomen T, Scharenberg     AM, Joung JK. Engineered zinc finger nickases induce homology-directed repair with     reduced mutagenic effects. Nucleic Acids Res. 2012 Feb 28. [Epub ahead of print].

Sander JD, Maeder ML, Joung JK. Engineering designer nucleases with customized cleavage     specificities. Curr Protoc Mol Biol. 2011 Oct;Chapter 12:Unit12.13.

Sander JD, Yeh JR, Peterson RT, Joung JK. Engineering zinc finger nucleases for targeted     mutagenesis of zebrafish. Methods Cell Biol. 2011;104:51-8.

Sebastiano V, Maeder ML, Angstman JF, Haddad B, Khayter C, Yeo DT, Goodwin MJ, Hawkins JS,     Ramirez CL, Batista LF, Artandi SE, Wernig M*, Joung JK*. In situ genetic correction of the     sickle cell anemia mutation in human induced pluripotent stem cells using engineered zinc     finger nucleases. Stem Cells. 2011 Nov;29(11):1717-26. *Co-corresponding authors

Pattanayak V, Ramirez CL, Joung JK, Liu DR. Revealing off-target cleavage specificities of     zinc-finger nucleases by in vitro selection. Nat Methods. 2011 Aug 7;8(9):765-70.

Sander JD, Cade L, Khayter C, Reyon D, Peterson RT, Joung JK*, Yeh JR*. Targeted gene     disruption in somatic zebrafish cells using engineered TALENs. Nat Biotechnol. 2011 Aug     5;29(8):697-8. *Co-corresponding authors

Lee J, Hirsh AS, Wittner BS, Maeder ML, Singavarapu R, Lang M, Janarthanan S, McDermott U, Yajnik     V, Ramaswamy S, Joung JK*, Sgroi DC*. Induction of stable drug resistance in human breast     cancer cells using a combinatorial zinc finger transcription factor library. PLoS One.     2011;6(7):e21112. *Co-corresponding authors

Rahman SH, Maeder ML, Joung JK, Cathomen T. Zinc-finger nucleases for somatic gene therapy:     the next frontier. Hum Gene Ther. 2011 Jun 1. [Epub ahead of print]

Curtin SJ, Zhang F, Sander JD, Haun WJ, Starker C, Baltes NJ, Reyon D, Dahlborg EJ, Goodwin MJ,     Coffman AP, Dobbs D, Joung JK, Voytas DF, Stupar RM. Targeted mutagenesis of duplicated     genes in soybean with zinc-finger nucleases breakthrough technologies. Plant Physiol. 2011     Jun;156(2):466-73.

Reyon D, Kirkpatrick JR, Sander JD, Zhang F, Voytas DF, Joung JK, Dobbs D, Coffman CR.     ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in     model organisms. BMC Genomics. 2011 Jan 28;12:83.

Sander JD, Dahlborg EJ, Goodwin MJ, Cade L, Zhang F, Cifuentes D, Curtin SJ, Blackburn JS,     Thibodeau-Beganny S, Qi Y, Pierick CJ, Hoffman E, Maeder ML, Khayter C, Reyon D, Dobbs D,     Langenau DM, Stupar RM, Giraldez AJ, Voytas DF, Peterson RT, Yeh JR, Joung JK. Selection-free     zinc-finger-nuclease engineering by context-dependent assembly (CoDA). Nat Methods.     2010 Dec 12; doi: 10.1038/nmeth.1542.

Sander JD, Reyon D, Maeder ML, Foley JE, Thibodeau-Beganny S, Li X, Regan MR, Dahlborg E,     Goodwin MJ, Fu F, Voytas DF, Joung JK, Dobbs D. Predicting success of oligomerized pool     engineering (OPEN) for zinc finger target site sequences. BMC Bioinformatics. 2010; 11: 543.

Söllü C, Pars K, Cornu TI, Thibodeau-Beganny S, Maeder ML, Joung JK, Heilbronn R, Cathomen T.     Autonomous zinc-finger nuclease pairs for targeted chromosomal deletion. Nucleic Acids     Res. 2010 Aug 16. Epub ahead of print.

Sander JD, Maeder ML, Reyon D, Voytas DF, Joung JK, Dobbs D. ZiFiT (Zinc Finger Targeter): an     updated zinc finger engineering tool. Nucleic Acids Res. 2010 Jul 1;38 Suppl:W462-8.

Zhang F, Maeder ML, Unger-Wallace E, Hoshaw JP, Reyon D, Christian M, Li X, Pierick CJ, Dobbs D,     Peterson T, Joung JK, Voytas DF. High frequency targeted mutagenesis in Arabidopsis     thaliana using zinc finger nucleases. Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):12028-33.

Thibodeau-Beganny S, Maeder ML, Joung JK. Engineering single Cys2His2 zinc finger domains     using a bacterial cell-based two-hybrid selection system. Methods Mol Biol. 2010;649:31-50.

Joung JK, Voytas DF, Cathomen T. Reply to Genome editing with modularly assembled
     zinc-finger nucleases
, Nat Methods, 2010, 7: 91-92.

Voytas DF, Joung JK. Plant science. DNA binding made easy, Science, 2009, 326: 1491-1492.

Foley JE, Maeder ML, Pearlberg J, Joung JK, Peterson RT, Yeh JR. Targeted mutagenesis in
     zebrafish using customized zinc-finger nucleases
, Nat Protocols, 2009, 4: 1855-1867.

Maeder ML, Thibodeau-Beganny S, Sander JD, Voytas DF, Joung JK. Oligomerized Pool     ENgineering (OPEN): An "Open-Source" Protocol for Making Customized Zinc Finger Arrays,     Nat Protocols, 2009, 4: 1471-1501.

Zou J, Maeder ML, Mali P, Pruett-Miller SM, Thibodeau-Beganny S, Chou, B-K, Chen G, Ye Z, Park
    I-H,  Daley GQ, Porteus MH, Joung JK, Cheng L. Gene targeting of a disease-related gene in     human induced pluripotent stem and embryonic stem cells, Cell Stem Cell, 2009, 5: 97-110.

Townsend JA, Wright DA, Winfrey RJ, Fu F, Maeder ML, Joung JK, Voytas DF. High Frequency      Modification of Plant Genes Using Engineered Zinc Finger Nucleases, Nature, 2009, 459:
      442-445.

Foley JE, Yeh J-R Y, Maeder ML, Reyon D, Sander JD, Peterson RT, Joung JK. Rapid Mutation of      Endogenous Zebrafish Genes Using Zinc Finger Nucleases Made by Oligomerized Pool      ENgineering (OPEN), PLoS ONE, 2009, 4: e4348.

Sander JD, Zaback P, Joung JK, Voytas DF, Dobbs D. An affinity-based scoring scheme for      predicting DNA-binding activities of modularly assembled zinc-finger proteins, Nucleic     Acids Res., 2009, 37: 506-515.

Fu F, Sander JD, Maeder ML, Thibodeau-Beganny S, Joung JK, Dobbs D, Miller L, Voytas DF. Zinc      Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and     engineered zinc finger arrays, Nucleic Acids Res., 2009, 35: D279-D283.

Maeder ML, Thibodeau-Beganny S, Osiak A, Wright DA, Anthony RM, Eichtinger M, Jiang T, Foley JE,      Winfrey RJ, Townsend JA, Unger-Wallace E, Sander JD, Muller-Lerch F, Fu F, Pearlberg J, Gobel C,      Dassie J, Pruett-Miller SM, Porteus MH, Sgroi DC, Iafrate AJ, Dobbs D, McCray PB, Cathomen T,      Voytas DF, Joung JK. Rapid "open-source" engineering of customized zinc-finger nucleases      for highly efficient gene modification, Mol Cell, 2008, 31: 294-301.

Ramirez CL, Foley JE, Wright DA, Muller-Lerch F, Rahman SH, Cornu TI, Winfrey RJ, Sander JD, Fu F,      Townsend JA, Cathomen T, Voytas DF, Joung JK. Unexpected failure rates for modular      assembly of engineered zinc fingers, Nat Methods, 2008, 5: 374-375.

Pruett-Miller SM, Connelly JP, Maeder ML, Joung JK, Porteus MH. Comparison of Zinc Finger      Nucleases for Use In Gene Targeting in Mammalian Cells, Mol Ther., 2008, 16: 707-717.

Cornu TI, Thibodeau-Beganny S, Guhl E, Alwin S, Eichtinger M, Joung JK, Cathomen T. DNA-binding      specificity is a major determinant of the activity and toxicity of zinc-finger nucleases, Mol      Ther., 2008, 16: 352-8.

Meng X, Thibodeau-Beganny S, Jiang T, Joung JK, Wolfe SA. Profiling the DNA-binding     specificities of engineered Cys2His2 zinc finger domains using a rapid cell-based method,     Nucleic Acids Res., 2007, 35: e81.

Sander JD, Zaback P, Joung JK, Voytas DF, Dobbs D. Zinc Finger Targeter (ZiFiT): An Engineered      Zinc Finger/Target Site Design Tool, Nucleic Acids Res., 2007, 35: W599-W605.

Wright DA, Thibodeau-Beganny S, Sander JD, Winfrey RJ, Hirsh AS, Eichtinger M, Fu F, Porteus MH,      Dobbs D, Voytas DF, Joung JK. Standardized reagents and protocols for engineering zinc      finger nucleases by modular assembly, Nat Protocols, 2006, 1: 1637-1652.

Giesecke AV, Fang R, Joung JK. Synthetic protein-protein interaction domains created by      shuffling Cys2His2 zinc fingers, Mol Sys Biol., 2006, doi: 10.1038/msb4100053

Meng X, Smith RM, Giesecke AV, Joung JK, Wolfe SA. A counter-selectable marker for
      bacterial-based interaction trap systems
, Biotechniques, 2006, 40: 179-184.

Vallet-Galy I, Donovan KE, Fang R, Joung JK, Dove SL. Repression of phase-variable cupA gene      expression by H-NS-like proteins in Pseudomonas aeruginosa, Proc. Natl. Acad. Sci. USA,      2005, 102: 11082-11087.

Serebriiskii IG, Fang R, Latypova E, Hopkins R, Vinson C, Joung JK, Golemis EA. A combined      yeast/bacterial two-hybrid system: development and evaluation, Mol Cell Proteomics 2005,      4: 819-826.

Nguyen-Hackley DH, Ramm E, Taylor CM, Joung JK, Dervan PB, Pabo CO. Allosteric Inhibition of
      Zinc-Finger Binding in the Major Groove of DNA by Minor-Groove Binding Ligands
,      Biochemistry 2004; 43: 3880-3890.

Thibodeau SA, Fang R, Joung JK. An optimized high-throughput b-galactosidase assay for      bacterial cell-based reporter systems, Biotechniques 2004; 36: 410-415.

Hurt, JA, Thibodeau SA, Hirsh AS, Pabo CO, Joung JK. Highly specific zinc finger proteins     obtained by directed domain shuffling and cell-based selection, Proc. Natl. Acad. Sci. USA     2003; 100: 12271-12276.

Joung JK, Ramm EI, Pabo CO. A bacterial two-hybrid selection system for studying protein-DNA      and protein-protein interactions, Proc. Natl. Acad. Sci. USA 2000; 97: 7382-7387.

Dove SL, Joung JK, Hochschild A. Activation of prokaryotic transcription through arbitrary      protein-protein contacts, Nature 1997; 386: 627-630.